Compocyte Logo

Contents:

  • Compocyte 🐙 🎯
    • Getting started
      • Installation
        • Install dependencies
        • Install Compocyte from source
      • Inference
    • Pretrained model files
    • Full tutorials
    • Citation
  • Tutorials
    • Getting started with Compocyte
      • Screenshot
    • Inference with Compocyte
      • Notes
    • Training custom classifiers
    • Example dataset and end-to-end example
      • Notes
  • API
    • Core package
      • Compocyte.core
      • Compocyte.core.hierarchical_classifier
        • HierarchicalClassifier
      • Compocyte.core.tools
        • Hierarchical_Metric
        • delete_dict_entries()
        • dict_depth()
        • flatten_dict()
        • flatten_labels()
        • get_last_annotation()
        • get_leaf_nodes()
        • hierarchy_names_unique()
        • is_counts()
        • make_graph_from_edges()
        • set_node_to_depth()
        • z_transform_properties()
      • Compocyte.core.tuner
        • Tuner
    • Models
      • Compocyte.core.models
      • Compocyte.core.models.dense_torch
        • DenseTorch
      • Compocyte.core.models.log_reg
        • LogisticRegression
      • Compocyte.core.models.fit_methods
        • DaskBatchDataset
        • dataloaders_from_dask()
        • dataloaders_from_dense()
        • fit()
        • fit_logreg()
        • fit_torch()
        • fit_trees()
        • predict()
        • predict_logits()
        • samples_per_class()
        • set_threads()
      • Compocyte.core.models.dummy_classifier
        • DummyClassifier
      • Compocyte.core.models.trees
        • BoostedTrees
    • Base classes
      • Compocyte.core.base
      • Compocyte.core.base.data_base
        • DataBase
      • Compocyte.core.base.export_import_base
        • ExportImportBase
      • Compocyte.core.base.hierarchy_base
        • HierarchyBase
    • Quick API index
Compocyte
  • Overview: module code

All modules for which code is available

  • Compocyte.core.base.data_base
  • Compocyte.core.base.export_import_base
  • Compocyte.core.base.hierarchy_base
  • Compocyte.core.hierarchical_classifier
  • Compocyte.core.models.dense_torch
  • Compocyte.core.models.dummy_classifier
  • Compocyte.core.models.fit_methods
  • Compocyte.core.models.log_reg
  • Compocyte.core.models.trees
  • Compocyte.core.tools
  • Compocyte.core.tuner

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