API

This section contains the auto-generated API reference for the Compocyte package.

Core package

Compocyte.core	Core subpackage for Compocyte.
Compocyte.core.hierarchical_classifier	Hierarchical classifier implementation.
Compocyte.core.tools	Utility functions for Compocyte.
Compocyte.core.tuner	Hyperparameter tuner utilities.

Models

Compocyte.core.models	Model implementations used by Compocyte.
Compocyte.core.models.dense_torch	PyTorch dense model wrapper for Compocyte.
Compocyte.core.models.log_reg	Logistic regression wrapper used as a lightweight local classifier.
Compocyte.core.models.fit_methods	Shared fit and predict helper methods for different model wrappers.
Compocyte.core.models.dummy_classifier	A minimal dummy classifier used as a fallback local classifier.
Compocyte.core.models.trees	CatBoost-based boosted trees wrapper.

Base classes

Compocyte.core.base	Base classes for data handling, hierarchy management and import/export.
Compocyte.core.base.data_base	Data handling base class utilities.
Compocyte.core.base.export_import_base	Export / import helpers for hierarchical classifiers.
Compocyte.core.base.hierarchy_base	Hierarchy graph management utilities.

If you need a flat list of all modules, see the auto-generated files.

Quick API index

Below is a short inline index with one-line summaries for the most important modules. Click a module name to open its full API page.

• Compocyte.core — Core package utilities and primary entry points.

• Compocyte.core.hierarchical_classifier — HierarchicalClassifier: orchestrates feature selection, training and hierarchical prediction.

• Compocyte.core.tools — Utility functions and small helpers used across the codebase.

• Compocyte.core.tuner — Hyperparameter tuning helpers and experiment storage utilities.

Models

• Compocyte.core.models — Collection of model wrappers used by the framework.

• Compocyte.core.models.dense_torch — PyTorch feed-forward model wrapper and helpers.

• Compocyte.core.models.log_reg — Scikit-learn based logistic regression wrapper.

• Compocyte.core.models.fit_methods — Shared training/prediction utilities across model wrappers.

• Compocyte.core.models.trees — CatBoost wrapped boosted trees implementation.

Base classes

• Compocyte.core.base — Base classes used by higher-level modules.

• Compocyte.core.base.data_base — Data handling and AnnData helpers.

• Compocyte.core.base.export_import_base — Save/load helpers for classifier state and models.

• Compocyte.core.base.hierarchy_base — Hierarchy graph management utilities.