Compocyte.core.base.data_base

Data handling base class utilities.

This module contains base functionality for reading, validating and preprocessing AnnData objects used by the rest of the package.

class Compocyte.core.base.data_base.DataBase

Bases: object

Add explanation

add_variables(new_variables)

check_for_counts()

Checks self.adata.X and self.adata.raw.X for presence of raw count data.

ensure_normlog()

ensure_not_view()

Ensures that the AnnData object saved within is not a view.

load_adata(adata)

variable_match_adata(new_adata)