Compocyte.pretrained.pbmc_pretrained¶

Compocyte.pretrained.pbmc_pretrained()[source]¶

Pretrained PBMC classifier from Beltz et al 2026.

Returns:: HierarchicalClassifier with pretrained parameters.
Return type:: HierarchicalClassifier

Example

>>> import Compocyte
>>> import scanpy as sc
>>> from Compocyte.core.hierarchical_classifier import HierarchicalClassifier
>>> from Compocyte.pretrained import til_pretrained, pbmc_pretrained
>>> hc = pbmc_pretrained()
>>> adata = sc.datasets.pbmc3k()
>>> hc.load_adata(adata)
>>> hc.predict_all_child_nodes('Blood')
>>> print(hc.adata.obs)